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| Summary: Broad GDAC 2015_11_01 stddata Run https://gdac.broadinstitute.org/runs/stddata__2015_11_01/ |
| Summary: Broad GDAC 2014_07_15 analyses Run https://gdac.broadinstitute.org/runs/analyses__2014_07_15/ |
| Summary: Broad GDAC 2013_02_22 analyses Run https://gdac.broadinstitute.org/runs/analyses__2013_02_22/ |
| Summary: Broad GDAC 2011_10_26 stddata Run https://gdac.broadinstitute.org/runs/stddata__2011_10_26/ |
| Broad GDAC analyses__2014_04_16__hnsc Run Status https://gdac.broadinstitute.org/runs/analyses__2014_04_16/HNSC.html |
| Broad GDAC stddata__2013_06_23 Run Status : OV https://gdac.broadinstitute.org/runs/stddata__2013_06_23/OV.html |
| Broad GDAC stddata__2012_08_25 Run Status : OV https://gdac.broadinstitute.org/runs/stddata__2012_08_25/OV.html |
| Broad GDAC stddata__2015_11_01 Run Status : UCS https://gdac.broadinstitute.org/runs/stddata__2015_11_01/UCS.html |
| Broad GDAC stddata__2014_03_16 Run Status : KIRC https://gdac.broadinstitute.org/runs/stddata__2014_03_16/KIRC.html |
| Broad GDAC Firehose https://gdac.broadinstitute.org/. |
| TCGA GDAC Firehose clinical parameters map - Broad Institute https://gdac.broadinstitute.org/runs/info/clinical/ |
| Analysis Overview https://gdac.broadinstitute.org/runs/analyses__latest/reports/ |
| Acute Myeloid Leukemia (LAML) Samples Report - Broad Institute https://gdac.broadinstitute.org/runs/stddata__latest/samples_report/LAML.html |
| Broad GDAC Firehose Analyses Workflow Graph https://gdac.broadinstitute.org/Analyses-DAG.html |
| Analysis Overview - Breast Invasive Carcinoma (Primary solid tumor) https://gdac.broadinstitute.org/runs/analyses__latest/reports/cancer/BRCA/ |
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Rationale Mission Statement TCGA Encyclopedia CGA Tools How To Cite Version Info FireBrowse Dashboards Standard Data Standard Analyses Custom AWG Runs MAF Dashboard Data Usage Policy Dashboard Release Notes Levels and Types Workflow graph Quicklook Table Full Samples Report Latest Internal Mirror Analyses Reports Workflow graph Dashboard Release Notes Quicklook Table How To Cite Software FireBrowse Python/Unix bindings FireBrowse R bindings firehose_get Nozzle Gistic MutSig CGA Tools Documentation Data Usage Policy How To Cite Clinical Parameters Pipelines & Data Custom AWG Runs TCGA Encyclopedia Talks Process Flow QualityControl CGA Tools Internal FAQ Download Contact Us Send Email Browse Email Archive Browse Issue Tracker More Info What’s New? Analysis Runs Stddata Runs Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF ACC 92 92 90 0 80 0 79 0 80 46 90 0 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF BLCA 412 412 410 112 412 0 408 0 409 344 130 395 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF BRCA 1098 1097 1089 19 1097 526 1093 0 1078 887 977 0 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF CESC 307 307 295 50 307 0 304 0 307 173 194 0 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF CHOL 51 45 36 0 36 0 36 0 36 30 35 0 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF COAD 460 458 451 69 457 153 457 0 406 360 154 367 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF COADREAD 631 629 616 104 622 222 623 0 549 491 223 489 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF DLBC 58 48 48 0 48 0 48 0 47 33 48 0 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF ESCA 185 185 184 51 185 0 184 0 184 126 185 0 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF FPPP 38 38 0 0 0 0 0 0 23 0 0 0 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF GBM 613 595 577 0 420 540 160 565 0 238 290 290 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF GBMLGG 1129 1110 1090 52 936 567 676 565 512 668 576 806 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF HNSC 528 528 522 108 528 0 520 0 523 212 279 510 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF KICH 113 113 66 0 66 0 66 0 66 63 66 66 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF KIPAN 973 941 883 0 892 88 889 0 873 756 644 799 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF KIRC 537 537 528 0 535 72 533 0 516 478 417 451 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF KIRP 323 291 289 0 291 16 290 0 291 215 161 282 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF LAML 200 200 197 0 194 0 179 0 188 0 197 0 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF LGG 516 515 513 52 516 27 516 0 512 430 286 516 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF LIHC 377 377 370 0 377 0 371 0 372 63 198 373 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF LUAD 585 522 516 120 578 32 515 0 513 365 230 542 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF LUSC 504 504 501 0 503 154 501 0 478 328 178 0 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF MESO 87 87 87 0 87 0 87 0 87 63 0 0 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF OV 602 591 586 0 594 574 304 570 453 426 316 469 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF PAAD 185 185 184 0 184 0 178 0 178 123 150 184 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF PCPG 179 179 175 0 179 0 179 0 179 80 179 0 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF PRAD 499 499 492 115 498 0 497 0 494 352 332 498 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF READ 171 171 165 35 165 69 166 0 143 131 69 122 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF SARC 261 261 257 0 261 0 259 0 259 223 247 0 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF SKCM 470 470 469 118 470 0 469 0 448 353 343 366 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF STAD 443 443 442 107 443 0 415 0 436 357 289 395 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF STES 628 628 626 158 628 0 599 0 620 483 474 395 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF TGCT 150 134 150 0 150 0 150 0 150 118 149 0 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF THCA 503 503 499 98 503 0 501 0 502 222 402 496 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF THYM 124 124 123 0 124 0 120 0 124 90 123 0 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF UCEC 560 548 540 106 547 54 545 0 538 440 248 0 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF UCS 57 57 56 0 57 0 57 0 56 48 57 0 Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF UVM 80 80 80 51 80 0 80 0 80 12 80 0 Disease Name Cohort Cases Analyses Data Adrenocortical carcinoma ACC 92 Browse Browse Bladder urothelial carcinoma BLCA 412 Browse Browse Breast invasive carcinoma BRCA 1098 Browse Browse Cervical and endocervical cancers CESC 307 Browse Browse Cholangiocarcinoma CHOL 51 Browse Browse Colon adenocarcinoma COAD 460 Browse Browse Colorectal adenocarcinoma COADREAD 631 Browse Browse Lymphoid Neoplasm Diffuse Large B-cell Lymphoma DLBC 58 Browse Browse Esophageal carcinoma ESCA 185 Browse Browse FFPE Pilot Phase II FPPP 38 None Browse Glioblastoma multiforme GBM 613 Browse Browse Glioma GBMLGG 1129 Browse Browse Head and Neck squamous cell carcinoma HNSC 528 Browse Browse Kidney Chromophobe KICH 113 Browse Browse Pan-kidney cohort (KICH+KIRC+KIRP) KIPAN 973 Browse Browse Kidney renal clear cell carcinoma KIRC 537 Browse Browse Kidney renal papillary cell carcinoma KIRP 323 Browse Browse Acute Myeloid Leukemia LAML 200 Browse Browse Brain Lower Grade Glioma LGG 516 Browse Browse Liver hepatocellular carcinoma LIHC 377 Browse Browse Lung adenocarcinoma LUAD 585 Browse Browse Lung squamous cell carcinoma LUSC 504 Browse Browse Mesothelioma MESO 87 Browse Browse Ovarian serous cystadenocarcinoma OV 602 Browse Browse Pancreatic adenocarcinoma PAAD 185 Browse Browse Pheochromocytoma and Paraganglioma PCPG 179 Browse Browse Prostate adenocarcinoma PRAD 499 Browse Browse Rectum adenocarcinoma READ 171 Browse Browse Sarcoma SARC 261 Browse Browse Skin Cutaneous Melanoma SKCM 470 Browse Browse Stomach adenocarcinoma STAD 443 Browse Browse Stomach and Esophageal carcinoma STES 628 Browse Browse Testicular Germ Cell Tumors TGCT 150 Browse Browse Thyroid carcinoma THCA 503 Browse Browse Thymoma THYM 124 Browse Browse Uterine Corpus Endometrial Carcinoma UCEC 560 Browse Browse Uterine Carcinosarcoma UCS 57 Browse Browse Uveal Melanoma UVM 80 Browse BrowseDownloading data from this site constitutes agreement to TCGA data usage policy . Copyright (c) 2016 Broad Institute of MIT & Harvard . Please note that downloading primary data and analysis results from our Broad Institute GDAC Firehose constitutes an acknowledgement that you and collaborators will adhere to TCGA guidelines on the responsible use of data ....
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